Tuesday, September 30, 2008

Life From Chemicals

Ever wonder why we're here? How life started in the first place?

I hope so!

The mechanism by which chaos was long ago transformed into ordered, living creatures has, and will continue to remain quite elusive. Nevertheless, it remains an active area of research, with varied approaches to understanding the origin of life. The vast importance of chemistry in this pursuit is evident in the historical evolution of inquiry.

In 1989, Thomas Cech at the University of Colorado, Boulder, was awarded the Nobel Prize in chemistry for his discovery that Ribonucleic acid (RNA) in the single-celled Tetrahymena thermophila could cleave and subsequently reconnect itself in the absence of a protein enzyme (i.e., RNA, which stores genetic information in the form of nucleotides, could act as a "ribozyme" and do its own chemistry!). This finding not only undermined popular beliefs surrounding the "central dogma" of molecular biology, which postulated that genetic information is transferred only from DNA to RNA to protein and not in the opposite direction, but it also shed light on an ongoing quest to determine what came first: DNA/RNA or protein (information or function)? Several cases of RNA acting in a "biocatalytic" fashion--both inter- and intramolecularly--were discovered soon thereafter, which lent further credence to an interesting possibility: the first organism capable of reproducing itself may have contained only RNA.

But how could RNA, a complex macromolecule, spontaneously form from the disorganized soup of materials (a mixture of variable gases, heat and light) that were likely available on the prebiotic Earth?

Stanley Miller and Harold Urey showed in 1953 that amino acids could be formed under conditions that were thought to simulate the prebiotic Earth (a mixture of gases and electric current in a closed system). Under similar conditions, Juan OrĂ³ later synthesized both amino acids and nucleotide bases (constituents of DNA and RNA). These results were ground-breaking (albeit within the contexts of gross suppositions about the conditions of the Earth and the influence of the surrounding solar system when life started) and they paved the way for further study in the area. In particular, they illustrated the important role of chemistry in elucidating the transformation from simple to complex.

Now the task remains to synthesize a living, RNA-containing organism in the lab. But even this won't answer the million-dollar question of how life began. Billions of years of growth and change have forever erased the prospect of knowing.

Monday, September 29, 2008

Chemical of the Week: Ozone

Did you ever wonder why there was an unusual smell in the air during or after a lightning storm?

Well wonder no more: that smell is ozone, O3.

Ozone in the atmosphere is produced by the reaction of ultraviolet light from the sun with oxygen, O2. The ultraviolet radiation causes molecular oxygen to split into two oxygen atoms, each of which then combines with molecular oxygen to produce ozone.


Although the highest concentrations of ozone are found in the stratosphere, low concentrations of ozone are also present in the troposphere, where it is considered a pollutant. The "ozone layer" in the stratosphere acts as a greenhouse gas by absorbing and emitting some of the infrared radiation (heat) emitted by the Earth. Greenhouse gases are useful in moderating the temperature of the Earth, but when their concentrations change significantly due to human activity, the threat of "global warming" arises. Some other common greenhouse gases include water vapor, carbon dioxide, methane, nitrous oxide, and chlorofluorocarbons (CFCs).

Sunday, September 28, 2008

Arrhenius Equation and Fevers

Did you ever wonder why getting a fever can be so dangerous? Or why food spoils faster when you leave it out of the fridge?

Let's consider the effect of temperature on the rate of a reaction with the use of the Arrhenius equation.
k = A e^{{-E_a}/{RT}} where k is the reaction rate constant, A is a "pre-exponential factor," which depends on the order of the reaction, R is the universal gas constant, and T is temperature. It is clear that if the temperature increases, the rate constant will increase as well. When considering common reactions that occur at room temperature, people often say that the rate of the reaction roughly doubles for every 10 degree increase in temperature. Although this is a useful generalization to keep in mind, it is only true when the energy of activation is low (on the order of 10 kcal/mol). Otherwise, this statement does not hold.
For a reaction with Ea=10 kcal/mol and A=1, the following values of k are obtained:It is apparent that the rule holds in this case. What about when the activation energy is slightly greater, say 20 kcal/mol?
In this case, the rate constants change more significantly with a change in temperature. (Does anyone know why this might be?)

For many reactions that occur near biological temperature, however, the rate does in fact roughly double with a 10 degree increase in temperature. This large effect of temperature on reaction rate can cause a serious disturbance in the fine-tuned ensemble of reactions occurring in our bodies.

Then why, you might ask, do we get fevers when we are sick? The existence of several pathogens that cause human illness is highly dependent on temperature. By raising our internal body temperature above the range in which a pathogen can survive, we are sometimes able to kill the organisms that have infected our bodies, albeit with some undesirable side effects.

Welcome!

Dear Visitors,

This is the inaugural post for an experimental blog designed to foster learning and understanding about chemistry. The blog will include a daily chemistry lesson, ranging from a molecule of the week to an interesting fact about chemistry in our daily lives. Feel free to post questions or thoughts!

Sincerely,

Jenna Jeffrey